PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013605174.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family DBB
Protein Properties Length: 187aa    MW: 20444.9 Da    PI: 6.217
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013605174.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.63.8e-06433534
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                     C+ +e+  ++ fC  ++  lC +C ++ H
  XP_013605174.1  4 LCDACESAAAIVFCAADEAALCCSCDEKVH 33
                    6**************************998 PP

2zf-B_box284.6e-095292238
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                    +++ C+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  XP_013605174.1 52 NAPSCDICENAPAFFYCEIDGTSLCLQCDMVVHVGgkrtHR 92
                    7899*****************************66666776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.253147IPR000315B-box-type zinc finger
CDDcd000212.55E-5345No hitNo description
SMARTSM003361.2E-5447IPR000315B-box-type zinc finger
SMARTSM003369.9E-145196IPR000315B-box-type zinc finger
PROSITE profilePS501199.3715196IPR000315B-box-type zinc finger
PfamPF006432.9E-75292IPR000315B-box-type zinc finger
CDDcd000211.50E-85496No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MRILCDACES AAAIVFCAAD EAALCCSCDE KVHMCNKLAS RHVRVGLADP SNAPSCDICE  60
NAPAFFYCEI DGTSLCLQCD MVVHVGGKRT HRRFLLLRQR IEFPGDKPNH ADDLGLRCQE  120
ANRQKVSSSG RGQESNGNGD HNMIDLNSNP QRVHEPGSNH QEQGIDVNST NNHEPVGVVP  180
VGTFKRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013711437.11e-137PREDICTED: B-box zinc finger protein 18 isoform X1
RefseqXP_013605174.11e-137PREDICTED: B-box zinc finger protein 18 isoform X1
SwissprotQ9SJU51e-112BBX18_ARATH; B-box zinc finger protein 18
TrEMBLA0A0D3DW841e-137A0A0D3DW84_BRAOL; Uncharacterized protein
STRINGBra031180.1-P1e-136(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21320.11e-113DBB family protein